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Collaborations
This page lists several example uses of Tranche and highlights a few of the collaborations between the Tranche developers and other groups. This is not a comprehensive list of projects, but it is a convenient list to reference in presentations or when telling others about what Tranche is currently being used for. It is also a good place to get ideas for what you might do with Tranche.
Click any of the below links for more information about the associated project. Please note that the ProteomeCommons.org Data webpages attempt to provide a fairly complete list of publications that have data in Tranche.
- Participation with community supported initiatives
- Tranche's implementation of the Science Commons Open Access Database Protocol
- Tranche FASTA file archive and implementation of the PSI recommended FASTA format
- Example large-scale, multi-lab proteomics studies that used or are using Tranche
- HUPO 2007 Study
- NCI CPTAC Data Collection
- NCI Mouse Models Data Archival
- ABRF 2007 sPRG Study
- ABRF 2006 sPRG Study
- Proteomics websites that link to and annotate Tranche data
- Indiana University Glycomics and Glycoproteomics Resource
- Vanderbilt Medical Center Data Sets Web Page
- ProteomeCommons.org Data Pages
- PRIDE: PRoteomics IDEntifications database (EMBL-EBI)
- ProteomeCommons.org FASTA Pages
- Tranche working with existing tools
- Tranche to Mascot
- Tranche to Peaks On-line
- Render BioXML files using TheGPM.org
- Generate SQT file from Sequest out files
- View CPAS XAR file summary
- Non-linear SameSpots
- Mirroring other proteomics resources