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TheGPM BioXML Renderer
TheGPM.org website is an open-source proteomics website sponsored by Beavis Informatics that is most widely known for the X!Tandem, TheGPM, GPMDB, and X!Hunter tools. [View our TheGPM.org data mirror page]
If you are citing the TheGPM.org render pipeline in Tranche, please use this citation information.
- Link to this page: http://tranche.proteomecommons.org/examples/thegpm/index.html
- Citation for Tranche: http://tranche.proteomecommons.org
- Citation for TheGPM.org: http://thegpm.org/
- Reference for BioXML format: http://www.bioxml.info/
View BioXML
To use this feature, you will need to install the module. Open up the Module Manager (from "Advanced Tools"), and select to install TheGPM.org BioXML Renderer Module from the server.
Tranche allows you to render a selected BioXML file using the TheGPM.org. Simply right-click on the file and select "View BioXML -> TheGPM.org".
- Step 1: Find a project that contains a BioXML file, and select "View Project Contents". In this example, we'll use "TheGPM.org's Amethyst". (Use the filter to find the project faster.)
- Step 2: After opening a project, right-click (or Control-click) on the valid BioXML file, and select "View BioXML -> TheGPM.org". (To find XML files faster, set the filter to "xml".) A progress bar will update you with the status. [View Screenshot]
- Step 3: When the file has been uploaded and parsed by TheGPM.org, a browser window will open with the result. [View Screenshot]
Links of interest
Screenshots